Identified secondary metabolite clusters

Cluster Type From To
The following clusters are from record NC_002516.2:
Cluster 1Nrps139575

Cluster 1 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(ser-arg-ser-orn) + (lys-orn) + (thr-thr)
PA2399
NRPSPredictor2 SVM: thr
Stachelhaus code: thr
Minowa: thr
consensus: thr

NRPSPredictor2 SVM: thr
Stachelhaus code: thr
Minowa: thr
consensus: thr

PA2400
NRPSPredictor2 SVM: asp,asn,glu,gln,aad
Stachelhaus code: lys
Minowa: lys
consensus: lys

NRPSPredictor2 SVM: hydrophilic
Stachelhaus code: orn
Minowa: orn
consensus: orn

PA2402
NRPSPredictor2 SVM: ser
Stachelhaus code: ser
Minowa: ser
consensus: ser

NRPSPredictor2 SVM: asp,asn,glu,gln,aad
Stachelhaus code: arg
Minowa: arg
consensus: arg

NRPSPredictor2 SVM: ser
Stachelhaus code: ser
Minowa: ser
consensus: ser

NRPSPredictor2 SVM: hydrophilic
Stachelhaus code: orn
Minowa: orn
consensus: orn

Database cross-links

Gene cluster description

Gene Cluster 1. Type = nrps. Location: 1 - 39575 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters