Identified secondary metabolite clusters

Cluster Type From To
The following clusters are from record AF484556.1:
Cluster 1Nrps-transatpks4778125040

Cluster 1 - Nrps-transatpks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(ser) + (nrp) + (thr) + (pk-ser) + (mal) + (cys) + (ala) + (nrp)
AAN85493.1
NRPSPredictor2 SVM: glu
Stachelhaus code: ser
Minowa: ser
consensus: ser

AAN85501.1
NRPSPredictor2 SVM: N/A
Stachelhaus code: phe
Minowa: ser
consensus: nrp

AAN85506.1
NRPSPredictor2 SVM: thr
Stachelhaus code: thr
Minowa: thr
consensus: thr

AAN85512.1
Minowa: NH2

NRPSPredictor2 SVM: ser
Stachelhaus code: ser
Minowa: ser
consensus: ser

LnmG
PKS signature: mal
Minowa: mal
consensus: mal

LnmI
NRPSPredictor2 SVM: cys
Stachelhaus code: cys
Minowa: cys
consensus: cys

LnmQ
NRPSPredictor2 SVM: ala
Stachelhaus code: ala
Minowa: ala
consensus: ala

LnmW
NRPSPredictor2 SVM: pro,pip
Stachelhaus code: tyr
Minowa: hpg
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 1. Type = nrps-transatpks. Location: 4778 - 125040 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))
transatpks: ((PKS_KS & ATd) or (ene_KS & ATd) or (mod_KS & ATd) or (hyb_KS & ATd) or (itr_KS & ATd) or (tra_KS & ATd))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters